Document Type
Article
Department/Program
Natural Science & Mathematics
Journal Title
PLoS One
Pub Date
12-30-2014
Volume
9
Issue
12
Journal Article URL
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0116388
Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 International License.
Abstract
Purpose
Researchers are currently seeking relevant lung cancer biomarkers in order to make informed decisions regarding therapeutic selection for patients in so-called “precision medicine.” However, there are challenges to obtaining adequate lung cancer tissue for molecular analyses. Furthermore, current molecular testing of tumors at the genomic or transcriptomic level are very indirect measures of biological response to a drug, particularly for small molecule inhibitors that target kinases. Kinase activity profiling is therefore theorized to be more reflective of in vivo biology than many current molecular analysis techniques. As a result, this study seeks to prove the feasibility of combining a novel minimally invasive biopsy technique that expands the number of lesions amenable for biopsy with subsequent ex vivo kinase activity analysis.
Methods
Eight patients with lung lesions of varying location and size were biopsied using the novel electromagnetic navigational bronchoscopy (ENB) technique. Basal kinase activity (kinomic) profiles and ex vivo interrogation of samples in combination with tyrosine kinase inhibitors erlotinib, crizotinib, and lapatinib were performed by PamStation 12 microarray analysis.
Results
Kinomic profiling qualitatively identified patient specific kinase activity profiles as well as patient and drug specific changes in kinase activity profiles following exposure to inhibitor. Thus, the study has verified the feasibility of ENB as a method for obtaining tissue in adequate quantities for kinomic analysis and has demonstrated the possible use of this tissue acquisition and analysis technique as a method for future study of lung cancer biomarkers.
Conclusions
We demonstrate the feasibility of using ENB-derived biopsies to perform kinase activity assessment in lung cancer patients.
Recommended Citation
Anderson, Joshua C.; Minnich, Douglas J.; Dobelbower, M. Christian; Denton, Alexander J.; Dussaq, Alex M.; Gilbert, Ashley N.; Rohrbach, Timothy; Arafat, Waleed; Welaya, Karim; Bonner, James A.; and Willey, Christopher D., "Kinomic Profiling of Electromagnetic Navigational Bronchoscopy Specimens: A New Approach for Personalized Medicine" (2014). Richard Bland Faculty Works. 11.
https://scholarworks.wm.edu/rbc_facwork/11
DOI
https://doi.org/10.1371/journal.pone.0116388
