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Submissions from 2017

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Carbon budget of a shallow, lagoonal estuary: Transformations and source-sink dynamics along the river-estuary-ocean continuum, JR Crosswell, Iris C. Anderson, JW Stanhope, B Van Dam, Mark Brush, and et al.

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Climate Change Impacts on Southern Ross Sea Phytoplankton Composition, Productivity, and Export, Daniel E. Kaufman, Marjorie A.M. Friedrichs, Walker O. Smith Jr., Eileen E. Hofmann, Michael S. Dinniman, and John C.P. Hemmings

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Consumer versus resource control and the importance of habitat heterogeneity for estuarine bivalves, RD Seitz, Rom Lipcius, and AH Hines

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Contrasting Photo-physiological Responses of the Haptophyte Phaeocystis Antarctica and the Diatom Pseudonitzschia sp. in the Ross Sea (Antarctica), Sasha Tozzi and Walker O. Smith Jr.

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Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach, Ann Arfken, BK Song, Jeff S. Bowman, and Michael Piehler

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Differential effects of bivalves on sediment nitrogen cycling in a shallow coastal bay, Ashley Smyth, Anna E. Murphy, Iris C. Anderson, and BK Song

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Ghost of invasion past: legacy effects on community disassembly following eradication of an invasive ecosystem engineer, PL Reynolds, J Glanz, S Yang, C Hann, J Couture, and E Grosholz

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Glycogen Concentration In Freeze-Dried Tissues Of Eastern Oyster (Crassostrea Virginica) Using Near Infrared Reflectance Spectroscopy To Determine The Relationship Between Concentrations Of The Tissues Excised For Histological Sampling And The Remaining Tissues, Eric Guevelou, Joseph L. Matt, and Standish K. Allen Jr.

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Identifying critical recruitment bottlenecks limiting seedling establishment in a degraded seagrass ecosystem, J Statton, LR Montoya, R J. Orth, KW Dixon, and GA Kendrick

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Impacts of Atmospheric Nitrogen Deposition on Surface Waters of the Western North Atlantic Mitigated by Multiple Feedbacks, Pierre St-Laurent, Marjorie A.M. Friedrichs, Raymond G. Najjar, D. K. Martins, M. Herrmann, Scott R. Miller, and John Wilkin

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KRILLBASE: a circumpolar database of Antarctic krill and salp numerical densities, 1926-2016, Angus Atkinson and Deborah K. Steinberg

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Linking the Abundance of Estuarine Fish and Crustaceans in Nearshore Waters to Shoreline Hardening and Land Cover, MS Kornis, D Breitburg, R Balouskus, DM Bilkovic, LA Davias, RD Seitz, and Et al.

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Lipid consumption in coral larvae differs among sites: a consideration of environmental history in a global ocean change scenario, Emily B. Rivest, CS Chen, TY Fan, HH Li, and GE Hofmann

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Marsh persistence under sea-level rise is controlled by multiple, geologically variable stressors, Molly Mitchell, Julie Herman, D. M. Bilkovic, and Carl Hershner

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Meiotic And Early Zygotic Development In Crassostrea Virginica Observed Through Confocal Microscopy, H Masaru, A Komaru, Joana Teixeira De Sousa, and Standish K. Allen Jr.

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Multifaceted biodiversity hotspots of marine mammals for conservation priorities, Camille Albouy, Valentine L. Delattre, Bastien Merigot, Christine N. Meynard, and Fabien Leprieur

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Mutualism between ribbed mussels and cordgrass enhances salt marsh nitrogen removal, Donna Marie Bilkovic, Molly Mitchell, Robert E. Isdell, Matthew Schliep, and Ashley R. Smyth

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Ocean acidification compromises a planktic calcifier with implications for global carbon cycling, CV Davis, Emily B. Rivest, and et al

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Oyster toadfish (Opsanus tau) boatwhistle call detection and patterns within a large-scale oyster restoration site, Shannon W. Ricci, DelWayne R. Bohnenstiehl, David B. Eggleston, M. Lisa Kellogg, and R. Patrick Lyon

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Preliminary estimate of contribution of Arctic nitrogen fixation to the global nitrogen budget, RE Sipler, Donglai Gong, SE Baer, MP Sanderson, QN Roberts, M Mulholland, and DA Bronk

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Sea Level Rise may Increase Extinction Risk of a Saltmarsh Ontogenetic Habitat Specialist, David S. Johnson and Bethany L. Williams

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Shelled pteropods in peril: Assessing vulnerability in a high CO2 ocean, C Manno, N Bednarsek, GA Tarling, VL Peck, S Comeau, Patricia S. Thibodeau, and Et al.

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Spatio-temporal development of vegetation die-off in a submerging coastal marsh, L Schepers, Matthew L. Kirwan, G Guntenspergen, and S Temmerman

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Submersed Aquatic Vegetation in Chesapeake Bay: Sentinel Species in a Changing World, R J. Orth, William C. Dennison, Jonathan S. Lefcheck, Cassie Gurbisz, Michael Hannam, Jennifer Keisman, J. Brooke Landry, Ken Moore, Rebecca R. Murphy, Christopher J. Patrick, Jeremy Testa, Donald E. Weller, and David J. Wilcox

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Temporal progression of photosynthetic-strategy in phytoplankton in the Ross Sea, Antarctica, T. J. Ryan-Keogh, L. M. DeLizo, Walker O. Smith Jr., and et al

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The Proposed Dropping of the Genus Crassostrea for All Pacific Cupped Oysters and Its Replacement by a New Genus Magallana: A Dissenting View, BL Bayne, M Ahrens, Standish K. Allen Jr., MA D'Auriac, and et al

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Tropical dead zones and mass mortalities on coral reefs, AH Altieri, SB Harrison, J Seemann, R Collin, RJ Diaz, and N Knowlton

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Understanding Changes in Seagrass Communities, Sarah Nuss and Celeste Venolia

Submissions from 2016

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Accelerating Tropicalization and the Transformation of Temperate Seagrass Meadows, Glenn A. Hyndes, Kenneth L. Heck Jr., et al, R J. Orth, and et al

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Assessing tidal marsh resilience to sea-level rise at broad geographic scales with multi-metric indices, KB Raposa, K Wasson, E Smith, JA Crooks, P Delgado, Scott Lerberg, and Et al.

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Beyond the benchtop and the benthos: Dataset management planning and design for time series of ocean carbonate chemistry associated with Durafet (R)-based pH sensors, Emily B. Rivest, M O'Brien, L Kapsenberg, CC Gotschalk, CA Blanchette, U Hoshijima, and GE Hofmann

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Biodiversity enhances reef fish biomass and resistance to climate change, JE Duffy, JS Lefcheck, RD Stuart-Smith, SA Navarrete, and GJ Edgar

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Brief Communication: Breeding vectors in the phase space reconstructed from time series data, Erin Lynch, Daniel Kaufman, A. Surjalal Sharma, Eugenia Kalnay, and Kayo Ide

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Chemical formation of hybrid di-nitrogen calls fungal codenitrification into question, Rebecca L. Phillips, BK Song, Andrew M. S. McMillan, Gwen Grelet, Bevan S. Weir, Thilak Palmada, and Craig Tobias

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Contribution and pathways of diazotroph-derived nitrogen to zooplankton during the VAHINE mesocosm experiment in the oligotrophic New Caledonia lagoon, Brian P. V. Hunt, Sophie Bonnet, Hugo Berthelot, Brandon J. Conroy, Rachel A. Foster, and Marc Pagano

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Copepod summer grazing and fecal pellet production along theWestern Antarctic Peninsula, MR Gleiber, Deborah K. Steinberg, and OME Schofield

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Effects Of Clam Aquaculture On Nektonic And Benthic Assemblages In Two Shallow-Water Estuaries, Mark Luckenbach, JN Kraeuter, and D Bushek

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Effects of sediment and salinity on the growth and competitive abilities of three submersed macrophytes, Erin C. Shields and Ken Moore

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Faunal Communities Are Invariant to Fragmentation in Experimental Seagrass Landscapes, Jonathan S. Lefcheck, Scott R. Marion, Alfonso V. Lombana, and R J. Orth

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Fungal denitrification: Bipolaris sorokiniana exclusively denitrifies inorganic nitrogen in the presence and absence of oxygen, R Phillips, G Grelet, A McMillan, BK Song, B Weir, and Et al.

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Global analysis of seagrass restoration: the importance of large-scale planting, MM van Katwijk, A Thorhaug, N Marba, R J. Orth, CM Duarte, and Et al.

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Interannual and seasonal variabilities in air-sea CO2 fluxes along the US eastern continental shelf and their sensitivity to increasing air temperatures and variable winds, Bronwyn Cahill, John Wilkin, Katja Fennel, Doug Vandemark, and Marjorie A.M. Friedrichs

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Marine Phytophthora species can hamper conservation and restoration of vegetated coastal ecosystems, LL Govers, WAM in 't Veid, JP Meffert, TJ Bouma, PCJ van Rijswick, JHT Heusinkveld, R J. Orth, MM van Katwijk, and T van der Heide

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Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?, Emily B. Graham, Joeseph E. Knelman, et al, BK Song, and et al

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Microbial nitrogen processing in hard clam (Mercenaria mercenaria) aquaculture sediments: the relative importance of denitrification and dissimilatory nitrate reduction to ammonium (DNRA), AE Murphy, Iris C. Anderson, AR Smyth, BK Song, and Mark Luckenbach

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Millennial-scale sustainability of the Chesapeake Bay Native American oyster fishery, TC Rick, LA Reeder-Myers, CA Hofman, D Breitburg, R Lockwood, G Henkes, L Kellogg, D Lowery, MW Luckenbach, R Mann, MB Ogburn, MJ Southworth, J Wah, J Wesson, and AH Hines

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Moving Forward 21st Century Pathways to Strengthen the Ocean Science Workforce Through Graduate Education and Professional Development, Linda C. Schaffner, T. W. Hartley, and J. G. Saunders

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Net primary productivity estimates and environmental variables in the Arctic Ocean; an assessment of coupled physical-biogeochemical models, Younjoo J. Lee, Patrica A. Matrai, Marjorie A.M. Friedrichs, and et al

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Nitrogen sources and net growth efficiency of zooplankton in three Amazon River plume food webs, Natalie Loick-Wilde, Sarah C. Weber, Brandon J. Condon, Douglas G. Capone, Victoria J. Coles, Patricia M. Medeiros, Deborah K. Steinberg, and Joseph P. Montoya

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Out of the Tower and into the Classroom OR How Classroom Partnerships Give Marine Science Grad Students an Edge, Carol Hopper Brill

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Prediction of the Export and Fate of Global Ocean Net Primary Production: The EXPORTS Science Plan, DA Siegel, KO Buesseler, et al, and Deborah K. Steinberg

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Progress and Challenges in Coupled Hydrodynamic-Ecological Estuarine Modeling, NK Ganju, Mark Brush, B Rashleigh, AL Aretxabaleta, P del Barrio, JS Grear, LA Harris, SJ Lake, and Et al.

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Responses of Antarctic Marine and Freshwater Ecosystems to Changing Ice Conditions, MK Obryk, PT Doran, et al, Deborah K. Steinberg, and HW Ducklow

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Salp contributions to vertical carbon flux in the Sargasso Sea, JP Stone and Deborah K. Steinberg

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Saltmarsh plant responses to eutrophication, David S. Johnson, RS Warren, LA Deegan, and TJ Mozdzer

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Spatial and temporal dynamics of Atlantic menhaden (Brevoortia tyrannus) recruitment in the Northwest Atlantic Ocean, A Buchheister, TJ Miller, ED Houde, DH Secor, and RJ Latour

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Upgrading Marine Ecosystem Restoration Using Ecological-Social Concepts, A Abelson, BS Halpern, DC Reed, R J. Orth, GA Kendrick, and et al

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Upgrading Marine Ecosystem Restoration Using Ecological‐Social Concepts, Avigdor Abelson, Benjamin S. Halpern, Daniel C. Reed, R J. Orth, and et al

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virtualspecies, an R package to generate virtual species distributions, B Leroy, CN Meynard, C Bellard, and F Courchamp

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Why biodiversity is important to the functioning of real-world ecosystems, DA Siegel, KO Buessler, et al, and Deborah K. Steinberg

Submissions from 2015

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Abstracts of Technical Papers, Presented at the 107th Annual Meeting, National Shellfisheries Association, Monterey, California, March 22–26, 2015, National Shellfisheries Association

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A framework for quantifying the magnitude and variability of community responses to global change drivers, Meghan L. Avolio, Kimberly J. La Pierre, Gregory R. Houseman, Sally E. Koerner, Emily Grman, Forest Isbell, David S. Johnson, and Kevin R. Wilcox

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An assessment of phytoplankton primary productivity in the Arctic Ocean from satellite ocean color/in situ chlorophyll-a based models, Younjoo J. Lee, Et al., and Marjorie A.M. Friedrichs

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Biodiversity enhances ecosystem multifunctionality across trophic levels and habitats, Jonathan S. Lefcheck, Jarrett E. K. Byrnes, Forest Isbell, Lars Gamfeldt, John N. Griffin, Nico Esienhaur, Marc J.S. Hensel, Andy Hector, Bradley J. Cardinale, and J. Emmett Duffy

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Biodiversity mediates top-down control in eelgrass ecosystems: a global comparative-experimental approach, JE Duffy, PL Reynolds, C Bostrom, JA Coyer, M Cusson, and Et al.

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Chesapeake Bay nitrogen fluxes derived from a land-estuarine ocean biogeochemical modeling system: Model description, evaluation, and nitrogen budgets, Yang Feng, Marjorie A.M. Friedrichs, John Wilkin, Hanqin Tian, Qichun Yang, Eileen E. Hofmann, Jerry D. Wiggert, and Raleigh Hood

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Comparison of surface chlorophyll, primary production, and satellite imagery in hydrographically different sounds off southern New England, Lindsey Fields, Jeffrey Mercer, Kimberly Hyde, Mark Brush, and et al

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Copepod carcasses as microbial hot spots for pelagic denitrification, RN Glud, HP Grossart, M Larsen, KW Tang, KE Arendt, and et al

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Corrigendum to Visual acuity in pelagic fishes and mollusks (vol 92, pg 1, 2013), YL Gagnon, TT Sutton, and S Johnsen

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Detection and diversity of copper containing nitrite reductase genes (nirK) in prokaryotic and fungal communities of agricultural soils, A Long, BK Song, K Fridey, and A Silva

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Dissolved oxygen dynamics during a phytoplankton bloom in the Ross Sea polynya, BY Queste, KJ Heywood, Walker O. Smith Jr., DE Kaufman, TD Jickells, and MS Dinniman

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Enhanced nutrient regeneration at commercial hard clam (Mercenaria mercenaria) beds and the role of macroalgae, Anna E. Murphy, Iris C. Anderson, and Mark W. Luckenbach

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Estimating the effects of seawater intrusion on an estuarine nitrogen cycle by comparative network analysis, David E. Hines, Jessica A. Lisa, BK Song, Craig R. Tobias, and Stuart R. Borrett

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Genetic and biogeochemical investigation of sedimentary nitrogen cycling communities responding to tidal and seasonal dynamics in Cape Fear River Estuary, JA Lisa, BK Song, CR Tobias, and DE Hines

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Historical summer distribution of the endangered North Atlantic right whale (Eubalaena glacialis): a hypothesis based on environmental preferences of a congeneric species, Sophie Monserrat, Maria G. Pennino, Tim D. Smith, Randall R. Reeves, Christine N. Meynard, David M. Kaplan, and Ana S.L. Rodrigues

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Increased nitrogen export from eastern North America to the Atlantic Ocean due to climatic and anthropogenic changes during 1901-2008, Qichun Yang, Hanqin Tian, Marjorie A.M. Friedrichs, Charles S. Hopkinson, Chaoqun Lu, and Raymond G. Najjar

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Influence of Central Pacific Oceanographic Conditions on the Potential Vertical Habitat of Four Tropical Tuna Species, AL Deary, S Moret-Ferguson, M Engels, E Zettler, and G Jaroslow

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Mapping diversity indices: not a trivial issue, V Granger, N Bez, JM Fromentin, C Meynard, and A Jadaud

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Marine biodiversity and ecosystem functioning: what's known and what's next?, L Gamfeldt, JS Lefcheck, JEK Byrnes, BJ Cardinale, and JE Duffy

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Modeling estuarine response to load reductions in a warmer climate: York River Estuary, Virginia, USA, Samuel J. Lake and Mark Brush

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Multitrophic functional diversity predicts ecosystem functioning in experimental assemblages of estuarine consumers, JS Lefcheck and JE Duffy

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Overcoming restoration paradigms: value of the historical record and metapopulation dynamics in native oyster restoration, Rom Lipcius, Russell P. Burke, Danielle N. McCulloch, Sebastian J. Schreiber, David M. Schulte, RD Seitz, and Jian Shen

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Photosynthesis-irradiance responses in the Ross Sea, Antarctica: a meta-analysis, Walker O. Smith Jr. and K. Donaldson

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piecewiseSEM: Piecewise structural equation modelling in r for ecology, evolution, and systematics, Jonathan S. Lefcheck

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Projected impacts of climate warming on the functional and phylogenetic components of coastal Mediterranean fish biodiversity, C Albouy, F Leprieur, F Le Loc'h, N Mouquet, CN Meynard, and Et al.

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Properties of age compositions and mortality estimates derived from cohort slicing of length data, LE Ailloud, MW Smith, AY Then, KL Omori, GM Ralph, and JM Hoenig

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Reproductive skew drives patterns of sexual dimorphism in sponge-dwelling snapping shrimps, STC Chak, JE Duffy, and DR Rubenstein

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Roles of dispersal and predation in determining seedling recruitment patterns in a foundational marine angiosperm, Stephen R. Manley, Robert J. Orth, and Leonardo Ruiz-Montoya

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Social Control of Reproduction and Breeding Monopolization in the Eusocial Snapping Shrimp Synalpheus elizabethae, STC Chak, DR Rubenstein, and JE Duffy

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Squidpops: A Simple Tool to Crowdsource a Global Map of Marine Predation Intensity, J. Emmett Duffy, Shelby L. Zeigler, Justin E. Campbell, Paige M. Bippus, and Jonathan S. Lefcheck

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Trophic cascades in the western Ross Sea, Antarctica: revisited, David G. Ainley, Grant Ballard, Randolph M. Jones, Dennis Jongsomjit, Stephen D. Pierce, Walker O. Smith Jr., and Sam Veloz

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Umbrella species in marine systems: using the endangered humphead wrasse to conserve coral reefs, Kevin C. Weng, Martin W. Pedersen, Gen A. Del Raye, Jennifer E. Caselle, and Andrew E. Gray

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Vertical mixing, critical depths, and phytoplankton growth in the Ross Sea, Walker O. Smith Jr. and RM Jones

Submissions from 2014

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Biogeochemical variability in the southern Ross Sea as observed by a glider deployment, DE Kaufman, MAM Friedrichs, WJ Smith Jr., BY Queste, and KJ Heywood

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Dimensions of biodiversity in Chesapeake Bay demersal fishes: patterns and drivers through space and time, Jonathan S. Lefcheck, Andre Buchheister, Katie May Laumann, Mark A. Stratton, Kathryn L. Sobocinski, Soloman Chak, Todd R. Clardy, Pamela L. Reynolds, Robert J. Latour, and Emmett J. Duffy

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Ecological value of coastal habitats for commercially and ecologically important species, RD Seitz, H Wennhage, U Bergstrom, RN Lipcius, and T Ysebaert

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Field experimental evidence that grazers mediate transition between microalgal and seagrass dominance, PL Reynolds, JP Richardson, and JE Duffy

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Impacts of freshwater flushing on anammox community structure and activities in the New River Estuary, USA, JA Lisa, B Song, CR Tobias, and KA Duernberger

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Individual, population, and ecosystem effects of hypoxia on a dominant benthic bivalve in Chesapeake Bay, W. Christopher Long, Rochelle D. Seitz, Bryce J. Brylawski, and Romuald N. Lipcius

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Investigating the relationship between biodiversity and ecosystem multifunctionality: challenges and solutions, Jarrett E. K. Byrnes, Lars Gamfeldt, Forest Isbell, Jonathan S. Lefcheck, John N. Griffin, Andy Hector, Bradley J. Cardinale, David U. Hooper, Laura E. Dee, and J. Emmett Duffy