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Submissions from 2016

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Marine Phytophthora species can hamper conservation and restoration of vegetated coastal ecosystems, LL Govers, WAM in 't Veid, JP Meffert, TJ Bouma, PCJ van Rijswick, JHT Heusinkveld, R J. Orth, MM van Katwijk, and T van der Heide

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Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?, Emily B. Graham, Joeseph E. Knelman, et al, BK Song, and et al

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Microbial nitrogen processing in hard clam (Mercenaria mercenaria) aquaculture sediments: the relative importance of denitrification and dissimilatory nitrate reduction to ammonium (DNRA), AE Murphy, Iris C. Anderson, AR Smyth, BK Song, and Mark Luckenbach

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Millennial-scale sustainability of the Chesapeake Bay Native American oyster fishery, TC Rick, LA Reeder-Myers, CA Hofman, D Breitburg, R Lockwood, G Henkes, L Kellogg, D Lowery, MW Luckenbach, R Mann, MB Ogburn, MJ Southworth, J Wah, J Wesson, and AH Hines

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Moving Forward 21st Century Pathways to Strengthen the Ocean Science Workforce Through Graduate Education and Professional Development, Linda C. Schaffner, T. W. Hartley, and J. G. Saunders

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Net primary productivity estimates and environmental variables in the Arctic Ocean; an assessment of coupled physical-biogeochemical models, Younjoo J. Lee, Patrica A. Matrai, Marjorie A.M. Friedrichs, and et al

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Nitrogen sources and net growth efficiency of zooplankton in three Amazon River plume food webs, Natalie Loick-Wilde, Sarah C. Weber, Brandon J. Condon, Douglas G. Capone, Victoria J. Coles, Patricia M. Medeiros, Deborah K. Steinberg, and Joseph P. Montoya

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Optimal hurricane overwash thickness for maximizing marsh resilience to sea level rise, David C. Walters and Matthew L. Kirwan

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Out of the Tower and into the Classroom OR How Classroom Partnerships Give Marine Science Grad Students an Edge, Carol Hopper Brill

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Oyster Planting Protocols To Deter Losses To Cownose Ray Predation, Roger L. Mann, Melissa Southworth, Robert A. Fisher, James A. Wesson, A. J. Erskine, and T Leggett

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Parallelism and Epistasis in Skeletal Evolution Identified through Use of Phylogenomic Mapping Strategies, JM Daane, N Rohner, P Konstantinidis, S Djuranovic, and MP Harris

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Patterns of genome size variation in snapping shrimp, NW Jeffery, K Hultgren, STC Chak, TR Gregory, and DR Rubenstein

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Physiological stress and post-release mortality of white marlin (Kajikia albida) caught in the United States recreational fishery, Lela S. Schlenker, Robert J. Latour, Richard Brill, and John Graves

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Plant characteristics associated with widespread variation in eelgrass wasting disease, ML Groner, CA Burge, CJS Kim, E Rees, and KL Van Alstyne

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Potential drivers of virulence evolution in aquaculture, David A. Kennedy, Gael Kurath, Ilana L. Brito, Maureen K. Purcell, Andrew F. Read, James R. Winton, and AR Wargo

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Prediction of the Export and Fate of Global Ocean Net Primary Production: The EXPORTS Science Plan, DA Siegel, KO Buesseler, et al, and Deborah K. Steinberg

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Progress and Challenges in Coupled Hydrodynamic-Ecological Estuarine Modeling, NK Ganju, Mark Brush, B Rashleigh, AL Aretxabaleta, P del Barrio, JS Grear, LA Harris, SJ Lake, and Et al.

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Quantitative Validation of a Habitat Suitability Index for Oyster Restoration, Seth J. Theuerkauf and Rom Lipcius

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Regression or significance tests: What other choice is there?—An academic perspective, Michael C. Newman and Marcos Krull

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Responses of Antarctic Marine and Freshwater Ecosystems to Changing Ice Conditions, MK Obryk, PT Doran, et al, Deborah K. Steinberg, and HW Ducklow

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Salp contributions to vertical carbon flux in the Sargasso Sea, JP Stone and Deborah K. Steinberg

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Saltmarsh plant responses to eutrophication, David S. Johnson, RS Warren, LA Deegan, and TJ Mozdzer

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Sea level driven marsh expansion in a coupled model of marsh erosion and migration, Matthew L. Kirwan, DC Walters, W. G. Reay, and JA Carr

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Seamless cross-scale modeling with SCHISM, Yinglong J. Zhang, F Ye, EV Stanev, and S Grashorn

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Short-Term Habitat Use of Juvenile Atlantic Bluefin Tuna, Benjamin J. Marcek, Mary C. Fabrizio, and John Graves

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Source-to-sink research: economy of the Earth's surface and its strata, JP Walsh, PL Wiberg, R Aalto, CA Nittrouer, and S. Kuehl

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Spatial and temporal dynamics of Atlantic menhaden (Brevoortia tyrannus) recruitment in the Northwest Atlantic Ocean, A Buchheister, TJ Miller, ED Houde, DH Secor, and RJ Latour

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Temporal dynamics of condition for estuarine fishes in their nursery habitats, R. W. Schloesser and Mary C. Fabrizio

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The demographic consequences of growing older and bigger in oyster populations, JL Moore, Rom Lipcius, B Puckettt, and SJ Schrieber

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The Dilemma of Derelict Gear, Andrew M. Scheld, D. M. Bilkovic, and Kirk J. Havens

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The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors, Yanouk Epelboin, Laure Quintric, Eric Guevelou, Pierre Boudry, Vianney Pichereau, and Charlotte Corporeau

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The logic of comparative life history studies for estimating key parameters, with a focus on natural mortality rate, JM Hoenig, AYH Then, EA Babcock, NG Hall, DA Hewitt, and SA Hesp

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Themed Issue Article: Conservation Physiology of Marine Fishes Fisheries conservation on the high seas: linking conservation physiology and fisheries ecology for the management of large pelagic fishes, Andrij Z. Horodysky, Steven J. Cooke, John Graves, and Richard Brill

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The nature of organic carbon in density-fractionated sediments in the Sacramento-San Joaquin River Delta (California), S. G. Wakeham and Elizabeth A. Canuel

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Tracking a Marine Ecotourism Star: Movements of the Short Ocean Sunfish Mola ramsayi in Nusa Penida, Bali, Indonesia, Tierney Thys, John P. Ryan, Kevin C. Weng, Mark Erdmann, and Joeharnani Tresnati

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Unstructured-grid model for the North Sea and Baltic Sea: Validation against observations, Yinglong J. Zhang, EV Stanev, and S Grashorn

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Upgrading Marine Ecosystem Restoration Using Ecological-Social Concepts, A Abelson, BS Halpern, DC Reed, R J. Orth, GA Kendrick, and et al

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Using Lidar Elevation Data to Develop a Topobathymetric Digital Elevation Model for Sub-Grid Inundation Modeling at Langley Research Center, Jon Derek Loftis, Harry V. Wang, RJ DeYoung, and WB Ball

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Variability in Fish Tissue Proximate Composition is Consistent with Indirect Effects of Hypoxia in Chesapeake Bay Tributaries, Troy Tuckey and Mary C. Fabrizio

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virtualspecies, an R package to generate virtual species distributions, B Leroy, CN Meynard, C Bellard, and F Courchamp

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Water residence time in Chesapeake Bay for 1980-2012, JB Du and Jian Shen

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Why biodiversity is important to the functioning of real-world ecosystems, DA Siegel, KO Buessler, et al, and Deborah K. Steinberg

Submissions from 2015

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Abstracts of Shellfish Technical Papers, Presented at the Joint Meeting of the Northeast Aquaculture Conference and Exposition and the 35th Milford Aquaculture Seminar, Portland, Maine, January 14–16, 2015, National Shellfisheries Association

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Abstracts of Technical Papers, Presented at the 107th Annual Meeting, National Shellfisheries Association, Monterey, California, March 22–26, 2015, National Shellfisheries Association

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A framework for quantifying the magnitude and variability of community responses to global change drivers, Meghan L. Avolio, Kimberly J. La Pierre, Gregory R. Houseman, Sally E. Koerner, Emily Grman, Forest Isbell, David S. Johnson, and Kevin R. Wilcox

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A generalized model for longitudinal short- and long-term mortality data for commercial fishery discards and recreational fishery catch-and-releases, HP Benoit, CW Capizzano, RJ Knotek, David Rudders, JA Sulikowski, and Et al.

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An assessment of phytoplankton primary productivity in the Arctic Ocean from satellite ocean color/in situ chlorophyll-a based models, Younjoo J. Lee, Et al., and Marjorie A.M. Friedrichs

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Anthropogenic controls on overwash deposition: Evidence and consequences, Laura J. Rogers, Laura J. Moore, Evan B. Goldstein, Christopher J. Hein, Jorge Lorenzo-Trueba, and Andrew D. Ashton

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Behavioral Immunity Suppresses an Epizootic in Caribbean Spiny Lobsters, Mark J. Butler, Donald C. Behringer, Thomas W. Dolan, JA Moss, and Jeffrey D. Shields

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Bioavailability of surface dissolved organic matter to aphotic bacterial communities in the Amundsen Sea Polynya, Antarctica, RE Sipler and TL Connelly

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Biodiversity enhances ecosystem multifunctionality across trophic levels and habitats, Jonathan S. Lefcheck, Jarrett E. K. Byrnes, Forest Isbell, Lars Gamfeldt, John N. Griffin, Nico Esienhaur, Marc J.S. Hensel, Andy Hector, Bradley J. Cardinale, and J. Emmett Duffy

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Biodiversity mediates top-down control in eelgrass ecosystems: a global comparative-experimental approach, JE Duffy, PL Reynolds, C Bostrom, JA Coyer, M Cusson, and Et al.

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Characterization and comparison of toxin-producing isolates of Dinophysis acuminata from New England and Canada, MM Tong, Juliette L. Smith, M Richlen, KA Steidinger, DM Kulis, and Et al.

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Characterizing the Natural System: Toward Sustained, Integrated Coastal Ocean Acidification Observing Networks to Facilitate Resource Management and Decision Support, SR Alin, RE Brainard, NN Price, JA Newton, A Cohen, EH DeCarlo, EH Shadwick, and et al

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Chesapeake Bay nitrogen fluxes derived from a land-estuarine ocean biogeochemical modeling system: Model description, evaluation, and nitrogen budgets, Yang Feng, Marjorie A.M. Friedrichs, John Wilkin, Hanqin Tian, Qichun Yang, Eileen E. Hofmann, Jerry D. Wiggert, and Raleigh Hood

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Choosing and using multiple traits in functional diversity research, JS Lefcheck, VAG Bastazini, and JN Griffin

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Comparison of surface chlorophyll, primary production, and satellite imagery in hydrographically different sounds off southern New England, Lindsey Fields, Jeffrey Mercer, Kimberly Hyde, Mark Brush, and et al

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Composition and temporal patterns of larval fish communities in Chesapeake and Delaware Bays, USA, Filipe Ribeiro, Edward Hale, Eric J. Hilton, Todd R. Clardy, Alison L. Deary, Timothy E. Targett, and John E. Olney

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Copepod carcasses as microbial hot spots for pelagic denitrification, RN Glud, HP Grossart, M Larsen, KW Tang, KE Arendt, and et al

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Corrigendum to Visual acuity in pelagic fishes and mollusks (vol 92, pg 1, 2013), YL Gagnon, TT Sutton, and S Johnsen

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Decadal re-evaluation of contaminant exposure and productivity of ospreys (Pandion haliaetus) nesting in Chesapeake Bay Regions of Concern, RS Lazarus, BA Rattner, PC McGowan, Robert Hale, and et al

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Decline of Yangtze River water and sediment discharge: Impact from natural and anthropogenic changes, S. L. Yang, K. H. Xu, J. D. Milliman, H.F. Yang, and C.S. Wu

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Decoupling the influence of biological and physical processes on the dissolved oxygen in the Chesapeake Bay, Jiabi Du and Jian Shen

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Detection and diversity of copper containing nitrite reductase genes (nirK) in prokaryotic and fungal communities of agricultural soils, A Long, BK Song, K Fridey, and A Silva

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Dissolved oxygen dynamics during a phytoplankton bloom in the Ross Sea polynya, BY Queste, KJ Heywood, Walker O. Smith Jr., DE Kaufman, TD Jickells, and MS Dinniman

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Drivers of Daily Routines in an Ectothermic Marine Predator: Hunt Warm, Rest Warmer?, Yannis P. Papastamatiou, Yuuki Y. Watanabe, Darcy Bradley, Laura E. Dee, Kevin C. Weng, Christopher Lowe, and Jennifer E. Caselle

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Dual Annual Spawning Races in Atlantic Sturgeon, Matthew T. Balazik and John A. Musick

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Ecology of the Ocean Sunfish, Mola mola, in the southern California Current System, TM Thys, JP Ryan, H Dewar, CR Perle, K Lyons, Kevin C. Weng, and Et al.

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Effects of terrestrial–aquatic connectivity on an estuarine turtle, Robert E. Isdell, Randolph M. Chambers, Donna M. Bilkovic, and Matthias Leu

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Enhanced nutrient regeneration at commercial hard clam (Mercenaria mercenaria) beds and the role of macroalgae, Anna E. Murphy, Iris C. Anderson, and Mark W. Luckenbach

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Enhancing Climate Education for a Changing Chesapeake Bay, Sarah Nuss and Jacklyn Beck

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Estimating the effects of seawater intrusion on an estuarine nitrogen cycle by comparative network analysis, David E. Hines, Jessica A. Lisa, BK Song, Craig R. Tobias, and Stuart R. Borrett

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Estimating the Sex Composition of the Summer Flounder Catch using Fishery-Independent Data, Jason M. Morson, Eleanor A. Bochenek, Eric N. Powell, Emerson C. Hasbrouck, Jennifer E. Gius, Charles F. Cotton, Kristin Gerbino, and Tara Froehlich

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Evaluating the predictive performance of empirical estimators of natural mortality rate using information on over 200 fish species, AY Then, JM Hoenig, NG Hall, and DA Hewitt

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Event-to-seasonal sediment dispersal on the Waipaoa River Shelf, New Zealand: A numerical modeling study, JM Moriarty, Courtney K. Harris, and MG Hadfield

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Genetic and biogeochemical investigation of sedimentary nitrogen cycling communities responding to tidal and seasonal dynamics in Cape Fear River Estuary, JA Lisa, BK Song, CR Tobias, and DE Hines

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Habitat context influences nitrogen removal by restored oyster reefs, AR Smyth, MF Piehler, and JH Grabowski

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Historical summer distribution of the endangered North Atlantic right whale (Eubalaena glacialis): a hypothesis based on environmental preferences of a congeneric species, Sophie Monserrat, Maria G. Pennino, Tim D. Smith, Randall R. Reeves, Christine N. Meynard, David M. Kaplan, and Ana S.L. Rodrigues

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Image processing methods for in situ estimation of cohesive sediment floc size, settling velocity, and density, SJ Smith and Carl T. Friedrichs

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Increased nitrogen export from eastern North America to the Atlantic Ocean due to climatic and anthropogenic changes during 1901-2008, Qichun Yang, Hanqin Tian, Marjorie A.M. Friedrichs, Charles S. Hopkinson, Chaoqun Lu, and Raymond G. Najjar

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Influence of Central Pacific Oceanographic Conditions on the Potential Vertical Habitat of Four Tropical Tuna Species, AL Deary, S Moret-Ferguson, M Engels, E Zettler, and G Jaroslow

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In situ phytoplankton distributions in the Amundsen Sea Polynya measured by autonomous gliders, O Schofield, T Miles, AC Alderkamp, S Lee, C Haskins, E Rogalsky, R Sipler, RM Sherrell, and PL Yager

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Iron supply and demand in an Antarctic shelf ecosystem, DJ McGillicuddy, PN Sedwick, MS Dinniman, KR Arrigo, TS Bibby, BJW Greenan, EE Hofmann, JM Klinck, Walker O. Smith Jr., SL Mack, CM Marsay, BM Sohst, and GL van Dijken

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Landscape-Level Variation in Disease Susceptibility Related to Shallow-Water Hypoxia, Denise L. Breitburg, Darryl Hondorp, Corinne Audemard, Ryan Carnegie, Rebecca B. Burrell, Mark Trice, and Virginia Clark

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Large-Scale Examination of Spatio-Temporal Patterns of Drifting Fish Aggregating Devices (dFADs) from Tropical Tuna Fisheries of the Indian and Atlantic Oceans, Alexandra Maufroy, Emmanuel Chassot, Rocio Joo, and David M. Kaplan

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Lethal and sublethal effects of sediment burial on the eastern oyster Crassostrea virginica, Allison M. Colden and Rom Lipcius

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Mapping diversity indices: not a trivial issue, V Granger, N Bez, JM Fromentin, C Meynard, and A Jadaud

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Marine biodiversity and ecosystem functioning: what's known and what's next?, L Gamfeldt, JS Lefcheck, JEK Byrnes, BJ Cardinale, and JE Duffy

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Modeling Continental Shelf Formation in the Adriatic Sea and Elsewhere, Lincoln Pratson and John Swenson

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Modeling estuarine response to load reductions in a warmer climate: York River Estuary, Virginia, USA, Samuel J. Lake and Mark Brush

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Modeling Storm Surge and Inundation in Washington, DC, during Hurricane Isabel and the 1936 Potomac River Great Flood, Harry V. Wang, Jon Derek Loftis, David R. Forrest, Wade Smith, and Barry Stamey

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Multitrophic functional diversity predicts ecosystem functioning in experimental assemblages of estuarine consumers, JS Lefcheck and JE Duffy

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Ontogenetic and Sex-Specific Shifts in the Feeding Habits of the Barndoor Skate, Joseph D. Schmitt, Todd Gedamke, William D. DuPaul, and John A. Musick

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Overcoming restoration paradigms: value of the historical record and metapopulation dynamics in native oyster restoration, Rom Lipcius, Russell P. Burke, Danielle N. McCulloch, Sebastian J. Schreiber, David M. Schulte, RD Seitz, and Jian Shen

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Perkinsus sp infections and in vitro isolates from Anadara trapezia (mud arks) of Queensland, Australia, C Dang, CF Dungan, GP Scott, and Kimberly S. Reece

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Photosynthesis-irradiance responses in the Ross Sea, Antarctica: a meta-analysis, Walker O. Smith Jr. and K. Donaldson

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Phylogeographic perspective on the distribution and dispersal of a marine pathogen, the oyster parasite Bonamia exitiosa, Kristina M. Hill-Spanik, Jan McDowell, Kimberly S. Reece, Eugene M. Burreson, and Ryan B. Carnegie

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Phytoplankton-bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge, EM Bertrand, JP McCrow, A Moustafa, H Zheng, JB McQuaid, AF Post, RE Sipler, JL Spackeen, K Xu, DA Bronk, DA Hutchins, and AE Allen

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Phytoplankton growth rates in the Ross Sea, Antarctica, Anna F. Mosby and Walker O. Smith Jr.

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piecewiseSEM: Piecewise structural equation modelling in r for ecology, evolution, and systematics, Jonathan S. Lefcheck