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Submissions from 2016

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AHR-related activities in a creosote-adapted population of adult atlantic killifish, Fundulus heteroclitus, two decades post-EPA superfund status at the Atlantic Wood Site, Portsmouth, VA USA, JV Wojdylo, W Vogelbein, LJ Bain, and CD Rice

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An individual-based approach to year-class strength estimation, S Thanassekos, RJ Latour, and MC Fabrizio

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Assessing tidal marsh resilience to sea-level rise at broad geographic scales with multi-metric indices, KB Raposa, K Wasson, E Smith, JA Crooks, P Delgado, S Lerberg, and Et al.

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Beyond the benchtop and the benthos: Dataset management planning and design for time series of ocean carbonate chemistry associated with Durafet (R)-based pH sensors, EB Rivest, M O'Brien, L Kapsenberg, CC Gotschalk, CA Blanchette, U Hoshijima, and GE Hofmann

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Biodiversity enhances reef fish biomass and resistance to climate change, JE Duffy, JS Lefcheck, RD Stuart-Smith, SA Navarrete, and GJ Edgar

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Brief Communication: Breeding vectors in the phase space reconstructed from time series data, Erin Lynch, Daniel Kaufman, A. Surjalal Sharma, Eugenia Kalnay, and Kayo Ide

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Challenges associated with modeling low-oxygen waters in Chesapeake Bay: a multiple model comparison, Isaac D. Irby, Marjorie A.M. Friedrichs, Carl T. Friedrichs, Aaron Bever, Raleigh R. Hood, Lyon W.J. Lanerolle, Ming Li, Lewis Linker, Malcolm Scully, Kevin Sellner, Jian Shen, Jeremy Testa, Hao Wang, Peng Wang, and Meng Xia

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Characterization of infectious dose and lethal dose of two strains of infectious hematopoietic necrosis virus (IHNV), DG McKenney, G Kurath, and AR Wargo

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Chemical formation of hybrid di-nitrogen calls fungal codenitrification into question, Rebecca L. Phillips, Bongkeun Song, Andrew M. S. McMillan, Gwen Grelet, Bevan S. Weir, Thilak Palmada, and Craig Tobias

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Combining Inverse and Transport Modeling to Estimate Bacterial Loading and Transport in a Tidal Embayment, Mac Sisson, Jian Shen, and Anne Schlegel

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Complex coastal change in response to autogenic basin infilling: An example from a sub-tropical Holocene strandplain, CJ Hein, DM FitzGerald, LHP de Souza, IY Georgiou, IV Buynevich, and Et al.

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Contribution and pathways of diazotroph-derived nitrogen to zooplankton during the VAHINE mesocosm experiment in the oligotrophic New Caledonia lagoon, Brian P. V. Hunt, Sophie Bonnet, Hugo Berthelot, Brandon J. Conroy, Rachel A. Foster, and Marc Pagano

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Copepod summer grazing and fecal pellet production along theWestern Antarctic Peninsula, MR Gleiber, DK Steinberg, and OME Schofield

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Data-Limited Population-Status Evaluation of Two Coastal Fishes in Southern Angola Using Recreational Catch Length-Frequency Data, Jennifer Beckensteiner, David M. Kaplan, Warren M. Potts, Carmen V. Santos, and Michael R. O'Farrell

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Depth as a driver of evolution in the deep sea: Insights from grenadiers (Gadiformes: Macrouridae) of the genus Coryphaenoides, MR Gaither, B Violi, HWI Gray, F Neat, JC Drazen, RD Grubbs, A Roa-Varon, T Sutton, and AR Hoelzel

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Development of the Hydrodynamic Model for Long-Term Simulation of Water Quality Processes of the Tidal James River, Virginia, Jian Shen, Ya Wang, and Mac Sisson

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Diel Variations in Survey Catch Rates and Survey Catchability of Spiny Dogfish and their Pelagic Prey in the Northeast US Continental Shelf Large Marine Ecosystem, Skyler R. Sagarese, Michael G. Frisk, Robert M. Cerrato, Kathy A. Sosebee, and John A. Musick

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Dissolved organic carbon fluxes in the Middle Atlantic Bight: An integrated approach based on satellite data and ocean model products, Antonio Mannino, Sergio R. Signorini, Michael Novak, John Wilkin, Marjorie A.M. Friedrichs, and Raymond G. Najjar

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Effects Of Clam Aquaculture On Nektonic And Benthic Assemblages In Two Shallow-Water Estuaries, Mark Luckenbach, JN Kraeuter, and D Bushek

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Effects of sediment and salinity on the growth and competitive abilities of three submersed macrophytes, Erin C. Shields and Kenneth A. Moore

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Evaluation of cytochalasin B and 6-dimethylaminopurine for tetraploidy induction in the Eastern oyster, Crassostrea virginica, BL Peachey and SK Allen

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Faunal Communities Are Invariant to Fragmentation in Experimental Seagrass Landscapes, Jonathan S. Lefcheck, Scott R. Marion, Alfonso V. Lombana, and Robert J. Orth

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First report of Perkinsus honshuensis in the variegated carpet shell clam Ruditapes variegatus in Korea, HS Kang, HS Yang, KS Reece, HK Hong, KI Park, and KS Choi

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Fungal denitrification: Bipolaris sorokiniana exclusively denitrifies inorganic nitrogen in the presence and absence of oxygen, R Phillips, G Grelet, A McMillan, B Song, B Weir, and Et al.

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Global analysis of seagrass restoration: the importance of large-scale planting, MM van Katwijk, A Thorhaug, N Marba, RJ Orth, CM Duarte, and Et al.

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Habitat Disturbance Combined With Life History Traits Facilitate Establishment Of Rapana Venosa In The Chesapeake Bay, Juliana M. Harding and Roger Mann

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Hidden in plain sight: Cryptic and endemic malaria parasites in North American white-tailed deer (Odocoileus virginianus), ES Martinsen, N McInerney, H Brightman, K Ferebee, T Walsh, and Et al.

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How well do we know the infaunal biomass of the continental shelf?, EN Powell and R Mann

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Improving marine disease surveillance through sea temperature monitoring, outlooks and projections, J Maynard, R van Hooidonk, CD Harvell, CM Eakin, G Liu, Jeffrey D. Shields, and Et al.

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Influence of Biological Factors on Connectivity Patterns for Concholepas concholepas (loco) in Chile, Lysel Garavelli, Franois Colas, Philippe Verley, David Michael Kaplan, Beatriz Yannicelli, and Christophe Lett

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Influence of Wind Strength and Duration on Relative Hypoxia Reductions by Opposite Wind Directions in an Estuary with an Asymmetric Channel, Ping Wang, Harry Wang, Lewis Linker, and Kyle Hinson

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Interannual and seasonal variabilities in air-sea CO2 fluxes along the US eastern continental shelf and their sensitivity to increasing air temperatures and variable winds, Bronwyn Cahill, John Wilkin, Katja Fennel, Doug Vandemark, and Marjorie A.M. Friedrichs

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Levels, sources and chemical fate of persistent organic pollutants in the atmosphere and snow along the western Antarctic Peninsula, MA Khairy, JL Luek, R Dickhut, and R Lohmann

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Managing aquatic parasites for reduced drug resistance: lessons from the land, GF McEwan, ML Groner, DL Burnett, MD Fast, and CW Revie

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Managing marine disease emergencies in an era of rapid change, ML Groner, J Maynard, R Breyta, RB Carnegie, A Dobson, and Et al.

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Managing marine mollusc diseases in the context of regional and international commerce: policy issues and emerging concerns, RB Carnegie, I Arzul, and D Bushek

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Marine Phytophthora species can hamper conservation and restoration of vegetated coastal ecosystems, LL Govers, WAM in 't Veid, JP Meffert, TJ Bouma, PCJ van Rijswick, JHT Heusinkveld, RJ Orth, MM van Katwijk, and T van der Heide

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Microbial nitrogen processing in hard clam (Mercenaria mercenaria) aquaculture sediments: the relative importance of denitrification and dissimilatory nitrate reduction to ammonium (DNRA), AE Murphy, IC Anderson, AR Smyth, B Song, and MW Luckenbach

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Millennial-scale sustainability of the Chesapeake Bay Native American oyster fishery, TC Rick, LA Reeder-Myers, CA Hofman, D Breitburg, R Lockwood, G Henkes, L Kellogg, D Lowery, MW Luckenbach, R Mann, MB Ogburn, MJ Southworth, J Wah, J Wesson, and AH Hines

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Moving Forward 21st Century Pathways to Strengthen the Ocean Science Workforce Through Graduate Education and Professional Development, L. C. Schaffner, T. W. Hartley, and J. G. Saunders

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Optimal hurricane overwash thickness for maximizing marsh resilience to sea level rise, David C. Walters and Matthew L. Kirwan

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Out of the Tower and into the Classroom OR How Classroom Partnerships Give Marine Science Grad Students an Edge, Carol Hopper Brill

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Oyster Planting Protocols To Deter Losses To Cownose Ray Predation, Roger L. Mann, Melissa Southworth, Robert A. Fisher, James A. Wesson, A. J. Erskine, and T Leggett

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Parallelism and Epistasis in Skeletal Evolution Identified through Use of Phylogenomic Mapping Strategies, JM Daane, N Rohner, P Konstantinidis, S Djuranovic, and MP Harris

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Patterns of genome size variation in snapping shrimp, NW Jeffery, K Hultgren, STC Chak, TR Gregory, and DR Rubenstein

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Physiological stress and post-release mortality of white marlin (Kajikia albida) caught in the United States recreational fishery, Lela S. Schlenker, Robert J. Latour, Richard W. Brill, and Graves John E.

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Plant characteristics associated with widespread variation in eelgrass wasting disease, ML Groner, CA Burge, CJS Kim, E Rees, and KL Van Alstyne

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Potential drivers of virulence evolution in aquaculture, David A. Kennedy, Gael Kurath, Ilana L. Brito, Maureen K. Purcell, Andrew F. Read, James R. Winton, and Andrew R. Wargo

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Prediction of the Export and Fate of Global Ocean Net Primary Production: The EXPORTS Science Plan, DA Siegel, KO Buesseler, et al, and DK Steinberg

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Progress and Challenges in Coupled Hydrodynamic-Ecological Estuarine Modeling, NK Ganju, MJ Brush, B Rashleigh, AL Aretxabaleta, P del Barrio, JS Grear, LA Harris, SJ Lake, and Et al.

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Quantitative Validation of a Habitat Suitability Index for Oyster Restoration, Seth J. Theuerkauf and Romuald N. Lipcius

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Regression or significance tests: What other choice is there?—An academic perspective, Michael C. Newman and Marcos Krull

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Responses of Antarctic Marine and Freshwater Ecosystems to Changing Ice Conditions, MK Obryk, PT Doran, et al, DK Steinberg, and HW Ducklow

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Salp contributions to vertical carbon flux in the Sargasso Sea, JP Stone and DK Steinberg

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Saltmarsh plant responses to eutrophication, DS Johnson, RS Warren, LA Deegan, and TJ Mozdzer

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Sea level driven marsh expansion in a coupled model of marsh erosion and migration, ML Kirwan, DC Walters, WG Reay, and JA Carr

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Seamless cross-scale modeling with SCHISM, YLJ Zhang, F Ye, EV Stanev, and S Grashorn

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Short-Term Habitat Use of Juvenile Atlantic Bluefin Tuna, Benjamin J. Marcek, Mary C. Fabrizio, and John E. Graves

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Source-to-sink research: economy of the Earth's surface and its strata, JP Walsh, PL Wiberg, R Aalto, CA Nittrouer, and SA Kuehl

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Spatial and temporal dynamics of Atlantic menhaden (Brevoortia tyrannus) recruitment in the Northwest Atlantic Ocean, A Buchheister, TJ Miller, ED Houde, DH Secor, and RJ Latour

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Temporal dynamics of condition for estuarine fishes in their nursery habitats, R. W. Schloesser and Mary C. Fabrizio

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The Dilemma of Derelict Gear, A. M. Scheld, D. M. Bilkovic, and K. J. Havens

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The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors, Yanouk Epelboin, Laure Quintric, Eric Guevelou, Pierre Boudry, Vianney Pichereau, and Charlotte Corporeau

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The logic of comparative life history studies for estimating key parameters, with a focus on natural mortality rate, JM Hoenig, AYH Then, EA Babcock, NG Hall, DA Hewitt, and SA Hesp

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Themed Issue Article: Conservation Physiology of Marine Fishes Fisheries conservation on the high seas: linking conservation physiology and fisheries ecology for the management of large pelagic fishes, Andrij Z. Horodysky, Steven J. Cooke, John E. Graves, and Richard W. Brill

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The nature of organic carbon in density-fractionated sediments in the Sacramento-San Joaquin River Delta (California), S. G. Wakeham and E. A. Canuel

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Unstructured-grid model for the North Sea and Baltic Sea: Validation against observations, YLJ Zhang, EV Stanev, and S Grashorn

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Upgrading Marine Ecosystem Restoration Using Ecological-Social Concepts, A Abelson, BS Halpern, DC Reed, RJ Orth, GA Kendrick, and Et al.

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Using Lidar Elevation Data to Develop a Topobathymetric Digital Elevation Model for Sub-Grid Inundation Modeling at Langley Research Center, JD Loftis, HV Wang, RJ DeYoung, and WB Ball

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Variability in Fish Tissue Proximate Composition is Consistent with Indirect Effects of Hypoxia in Chesapeake Bay Tributaries, Troy Tuckey and Mary C. Fabrizio

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virtualspecies, an R package to generate virtual species distributions, B Leroy, CN Meynard, C Bellard, and F Courchamp

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Water residence time in Chesapeake Bay for 1980-2012, JB Du and J Shen

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Why biodiversity is important to the functioning of real-world ecosystems, DA Siegel, KO Buessler, et at, and DK Steinberg

Submissions from 2015

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Abstracts of Shellfish Technical Papers, Presented at the Joint Meeting of the Northeast Aquaculture Conference and Exposition and the 35th Milford Aquaculture Seminar, Portland, Maine, January 14–16, 2015, National Shellfisheries Association

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Abstracts of Technical Papers, Presented at the 107th Annual Meeting, National Shellfisheries Association, Monterey, California, March 22–26, 2015, National Shellfisheries Association

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A framework for quantifying the magnitude and variability of community responses to global change drivers, Meghan L. Avolio, Kimberly J. La Pierre, Gregory R. Houseman, Sally E. Koerner, Emily Grman, Forest Isbell, David S. Johnson, and Kevin R. Wilcox

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A generalized model for longitudinal short- and long-term mortality data for commercial fishery discards and recreational fishery catch-and-releases, HP Benoit, CW Capizzano, RJ Knotek, DB Rudders, JA Sulikowski, and Et al.

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An assessment of phytoplankton primary productivity in the Arctic Ocean from satellite ocean color/in situ chlorophyll-a based models, Younjoo J. Lee, Et al., and Marjorie A.M. Friedrichs

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Anthropogenic controls on overwash deposition: Evidence and consequences, Laura J. Rogers, Laura J. Moore, Evan B. Goldstein, Christopher J. Hein, Jorge Lorenzo-Trueba, and Andrew D. Ashton

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Behavioral Immunity Suppresses an Epizootic in Caribbean Spiny Lobsters, Mark J. Butler, Donald C. Behringer, Thomas W. Dolan, Jessica Moss, and Jeffrey D. Shields

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Bioavailability of surface dissolved organic matter to aphotic bacterial communities in the Amundsen Sea Polynya, Antarctica, RE Sipler and TL Connelly

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Biodiversity enhances ecosystem multifunctionality across trophic levels and habitats, Jonathan S. Lefcheck, Jarrett E. K. Byrnes, Forest Isbell, Lars Gamfeldt, John N. Griffin, Nico Esienhaur, Marc J.S. Hensel, Andy Hector, Bradley J. Cardinale, and J. Emmett Duffy

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Biodiversity mediates top-down control in eelgrass ecosystems: a global comparative-experimental approach, JE Duffy, PL Reynolds, C Bostrom, JA Coyer, M Cusson, and Et al.

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CHARACTERIZATION AND COMPARISON OF TOXIN-PRODUCING ISOLATES OF DINOPHYSIS ACUMINATA FROM NEW ENGLAND AND CANADA, MM Tong, JL Smith, M Richlen, KA Steidinger, DM Kulis, and Et al.

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Characterizing the Natural System: Toward Sustained, Integrated Coastal Ocean Acidification Observing Networks to Facilitate Resource Management and Decision Support, SR Alin, RE Brainard, NN Price, JA Newton, A Cohen, and Et al.

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Chesapeake Bay nitrogen fluxes derived from a land-estuarine ocean biogeochemical modeling system: Model description, evaluation, and nitrogen budgets, Yang Feng, Marjorie A.M. Friedrichs, John Wilkin, Hanqin Tian, Qichun Yang, Eileen E. Hofmann, Jerry D. Wiggert, and Raleigh Hood

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Choosing and using multiple traits in functional diversity research, JS Lefcheck, VAG Bastazini, and JN Griffin

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Copepod carcasses as microbial hot spots for pelagic denitrification, RN Glud, HP Grossart, M Larsen, KW Tang, KE Arendt, and Et al.

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Decadal re-evaluation of contaminant exposure and productivity of ospreys (Pandion haliaetus) nesting in Chesapeake Bay Regions of Concern, RS Lazarus, BA Rattner, PC McGowan, RC Hale, and et al

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Decline of Yangtze River water and sediment discharge: Impact from natural and anthropogenic changes, S. L. Yang, K. H. Xu, J. D. Milliman, H.F. Yang, and C.S. Wu

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Decoupling the influence of biological and physical processes on the dissolved oxygen in the Chesapeake Bay, Jiabi Du and Jian Shen

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Detection and diversity of copper containing nitrite reductase genes (nirK) in prokaryotic and fungal communities of agricultural soils, A Long, B Song, K Fridey, and A Silva

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Dissolved oxygen dynamics during a phytoplankton bloom in the Ross Sea polynya, BY Queste, KJ Heywood, WO Smith, DE Kaufman, TD Jickells, and MS Dinniman

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Drivers of Daily Routines in an Ectothermic Marine Predator: Hunt Warm, Rest Warmer?, Yannis P. Papastamatiou, Yuuki Y. Watanabe, Darcy Bradley, Laura E. Dee, Kevin C. Weng, Christopher Lowe, and Jennifer E. Caselle

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Dual Annual Spawning Races in Atlantic Sturgeon, Matthew T. Balazik and John A. Musick

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Ecology of the Ocean Sunfish, Mola mola, in the southern California Current System, TM Thys, JP Ryan, H Dewar, CR Perle, K Lyons, Kevin C. Weng, and Et al.

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Enhanced nutrient regeneration at commercial hard clam (Mercenaria mercenaria) beds and the role of macroalgae, Anna E. Murphy, Iris C. Anderson, and Mark W. Luckenbach

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Estimating the Sex Composition of the Summer Flounder Catch using Fishery-Independent Data, Jason M. Morson, Eleanor A. Bochenek, Eric N. Powell, Emerson C. Hasbrouck, Jennifer E. Gius, Charles F. Cotton, Kristin Gerbino, and Tara Froehlich

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Evaluating the predictive performance of empirical estimators of natural mortality rate using information on over 200 fish species, AY Then, JM Hoenig, NG Hall, and DA Hewitt

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Event-to-seasonal sediment dispersal on the Waipaoa River Shelf, New Zealand: A numerical modeling study, JM Moriarty, CK Harris, and MG Hadfield