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Submissions from 2017

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Preliminary estimate of contribution of Arctic nitrogen fixation to the global nitrogen budget, RE Sipler, D Gong, SE Baer, MP Sanderson, QN Roberts, M Mulholland, and DA Bronk

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Projections of climate-driven changes in tuna vertical habitat based on species-specific differences in blood oxygen affinity, KAS Mislan, CA Deutsch, RW Brill, JP Dunne, and JL Sarmiento

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Recovery Of Visual Function In Pacific Halibut (Hippoglossus Stenolepis) After Exposure To Bright Light, Christopher Magel, Clifford Ryer, and Richard Brill

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Redox reactions and weak buffering capacity lead to acidification in the Chesapeake Bay, Wei-Jun Cai, Wei-Jen Huang, George W. Luther III, Denis Pierrot, Ming Li, Jeremy Testa, Ming Xue, Andrew Joesoef, Roger Mann, Jean Brodeur, Yuan-Yuan Xu, Baoshan Chen, Najid Hussain, George G. Waldbusser, Jeffery Cornwell, and W. Michael Kemp

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Reef height drives threshold dynamics of restored oyster reefs, Allison M. Colden, Robert J. Latour, and Romuald N. Lipcius

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Replication and shedding kinetics of infectious hematopoietic necrosis virus in juvenile rainbow trout, AR Wargo, RJ Scott, B Kerr, and G Kurath

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Sea Level Rise may Increase Extinction Risk of a Saltmarsh Ontogenetic Habitat Specialist, David S. Johnson and Bethany L. Williams

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Seasonal nitrogen uptake and regeneration in the western coastal Arctic, SE Baer, RE Sipler, QN Roberts, PL Yager, ME Frischer, and D Bronk

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Shelled pteropods in peril: Assessing vulnerability in a high CO2 ocean, C Manno, N Bednarsek, GA Tarling, VL Peck, S Comeau, Patricia S. Thibodeau, and Et al.

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Spatially integrative metrics reveal hidden vulnerability of microtidal salt marshes, Neil K. Ganju, Zafer Defne, Matthew L. Kirwan, Sergio Fagherazzi, Andrea D'Alpaos, and Luca Carniello

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Spatio-temporal development of vegetation die-off in a submerging coastal marsh, L Schepers, M Kirwan, G Guntenspergen, and S Temmerman

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Spatiotemporal trends and drivers of fish condition in Chesapeake Bay, Robert J. Latour, James Gartland, and Christopher F. Bonzek

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Submersed Aquatic Vegetation in Chesapeake Bay: Sentinel Species in a Changing World, Robert J. Orth, William C. Dennison, Jonathan S. Lefcheck, Cassie Gurbisz, Michael Hannam, Jennifer Keisman, J. Brooke Landry, Kenneth A. Moore, Rebecca R. Murphy, Christopher J. Patrick, Jeremy Testa, Donald E. Weller, and David J. Wilcox

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Temporal progression of photosynthetic-strategy in phytoplankton in the Ross Sea, Antarctica, T. J. Ryan-Keogh, L. M. DeLizo, W. O. Smith, and et al

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The origins of the anomalous warming in the California coastal ocean and San Francisco Bay during 2014-2016, Yi Chao, Et al., and Yinglong J. Zhang

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The Proposed Dropping of the Genus Crassostrea for All Pacific Cupped Oysters and Its Replacement by a New Genus Magallana: A Dissenting View, BL Bayne, M Ahrens, Standish K. Allen Jr., MA D'Auriac, and Et al.

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The roles of resuspension, diffusion and biogeochemical processes on oxygen dynamics offshore of the Rhone River, France: a numerical modeling study, Julia Moriarty, Courtney K. Harris, Katja Fennel, Marjorie A.M. Friedrichs, Kehui Xu, and Christophe Rabouille

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Transmission routes maintaining a viral pathogen of steelhead trout within a complex multi-host assemblage, Rachel Breyta, Ilana Brito, Paige Ferguson, Gael Kurath, Kerry Naish, Maureen Purcell, Andrew Wargo, and Shannon LaDeau

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Transport of Riverine Material From Multiple Rivers in the Chesapeake Bay: Important Control of Estuarine Circulation on the Material Distribution, Jiabi Du and Jian Shen

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Tropical dead zones and mass mortalities on coral reefs, AH Altieri, SB Harrison, J Seemann, R Collin, RJ Diaz, and N Knowlton

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Vaccine Effects on Heterogeneity in Susceptibility and Implications for Population Health Management, KE Langwig, AR Wargo, DR Jones, JR Viss, BJ Rutan, and Et al.

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Vegetation recovery in tidal marshes reveals critical slowing down under increased inundation, Jim van Belzen, Johan van de Koppel, Matthew L. Kirwan, Daphne van der Wal, Peter M.J. Herman, Vasilis Dakos, Sonia Kefi, Marten Scheffer, Glenn R. Guntenspergen, and Tjeerd J. Bouma

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World without borders-genetic population structure of a highly migratory marine predator, the blue shark (Prionace glauca), Ana Verssimo, Iris Sampaio, Jan R. McDowell, Paulo Alexandrino, Gonzalo Mucientes, Nuno Queiroz, Charlene da Silva, Catherine S. Jones, and Leslie R. Noble

Submissions from 2016

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A carbon budget for the Amundsen Sea Polynya, Antarctica: Estimating net community production and export in a highly productive polar ecosystem, PL Yager, RM Sherrell, et al, RE Sipler, and et al

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AHR-related activities in a creosote-adapted population of adult atlantic killifish, Fundulus heteroclitus, two decades post-EPA superfund status at the Atlantic Wood Site, Portsmouth, VA USA, JV Wojdylo, W Vogelbein, LJ Bain, and CD Rice

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An individual-based approach to year-class strength estimation, S Thanassekos, RJ Latour, and MC Fabrizio

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Assessing tidal marsh resilience to sea-level rise at broad geographic scales with multi-metric indices, KB Raposa, K Wasson, E Smith, JA Crooks, P Delgado, S Lerberg, and Et al.

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Beyond the benchtop and the benthos: Dataset management planning and design for time series of ocean carbonate chemistry associated with Durafet (R)-based pH sensors, EB Rivest, M O'Brien, L Kapsenberg, CC Gotschalk, CA Blanchette, U Hoshijima, and GE Hofmann

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Biodiversity enhances reef fish biomass and resistance to climate change, JE Duffy, JS Lefcheck, RD Stuart-Smith, SA Navarrete, and GJ Edgar

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Brief Communication: Breeding vectors in the phase space reconstructed from time series data, Erin Lynch, Daniel Kaufman, A. Surjalal Sharma, Eugenia Kalnay, and Kayo Ide

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Challenges associated with modeling low-oxygen waters in Chesapeake Bay: a multiple model comparison, Isaac D. Irby, Marjorie A.M. Friedrichs, Carl T. Friedrichs, Aaron Bever, Raleigh R. Hood, Lyon W.J. Lanerolle, Ming Li, Lewis Linker, Malcolm Scully, Kevin Sellner, Jian Shen, Jeremy Testa, Hao Wang, Peng Wang, and Meng Xia

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Characterization of infectious dose and lethal dose of two strains of infectious hematopoietic necrosis virus (IHNV), DG McKenney, G Kurath, and AR Wargo

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Chemical formation of hybrid di-nitrogen calls fungal codenitrification into question, Rebecca L. Phillips, Bongkeun Song, Andrew M. S. McMillan, Gwen Grelet, Bevan S. Weir, Thilak Palmada, and Craig Tobias

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Combining Inverse and Transport Modeling to Estimate Bacterial Loading and Transport in a Tidal Embayment, Mac Sisson, Jian Shen, and Anne Schlegel

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Complex coastal change in response to autogenic basin infilling: An example from a sub-tropical Holocene strandplain, CJ Hein, DM FitzGerald, LHP de Souza, IY Georgiou, IV Buynevich, and Et al.

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Contribution and pathways of diazotroph-derived nitrogen to zooplankton during the VAHINE mesocosm experiment in the oligotrophic New Caledonia lagoon, Brian P. V. Hunt, Sophie Bonnet, Hugo Berthelot, Brandon J. Conroy, Rachel A. Foster, and Marc Pagano

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Copepod summer grazing and fecal pellet production along theWestern Antarctic Peninsula, MR Gleiber, DK Steinberg, and OME Schofield

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Data-Limited Population-Status Evaluation of Two Coastal Fishes in Southern Angola Using Recreational Catch Length-Frequency Data, Jennifer Beckensteiner, David M. Kaplan, Warren M. Potts, Carmen V. Santos, and Michael R. O'Farrell

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Depth as a driver of evolution in the deep sea: Insights from grenadiers (Gadiformes: Macrouridae) of the genus Coryphaenoides, MR Gaither, B Violi, HWI Gray, F Neat, JC Drazen, RD Grubbs, A Roa-Varon, T Sutton, and AR Hoelzel

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Development of the Hydrodynamic Model for Long-Term Simulation of Water Quality Processes of the Tidal James River, Virginia, Jian Shen, Ya Wang, and Mac Sisson

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Diel Variations in Survey Catch Rates and Survey Catchability of Spiny Dogfish and their Pelagic Prey in the Northeast US Continental Shelf Large Marine Ecosystem, Skyler R. Sagarese, Michael G. Frisk, Robert M. Cerrato, Kathy A. Sosebee, and John A. Musick

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Dissolved organic carbon fluxes in the Middle Atlantic Bight: An integrated approach based on satellite data and ocean model products, Antonio Mannino, Sergio R. Signorini, Michael Novak, John Wilkin, Marjorie A.M. Friedrichs, and Raymond G. Najjar

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Effects Of Clam Aquaculture On Nektonic And Benthic Assemblages In Two Shallow-Water Estuaries, Mark Luckenbach, JN Kraeuter, and D Bushek

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Effects of Embryonic Exposure to Salinity Stress or Hypoxia on Post-metamorphic Growth and Survival of the Polychaete Capitella teleta, JA Pechenik, OR Chaparro, A Pilnick, M Karp, M Acquafredda, and R Burns

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Effects of sediment and salinity on the growth and competitive abilities of three submersed macrophytes, Erin C. Shields and Kenneth A. Moore

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Evaluation of cytochalasin B and 6-dimethylaminopurine for tetraploidy induction in the Eastern oyster, Crassostrea virginica, BL Peachey and SK Allen

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Faunal Communities Are Invariant to Fragmentation in Experimental Seagrass Landscapes, Jonathan S. Lefcheck, Scott R. Marion, Alfonso V. Lombana, and Robert J. Orth

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First report of Perkinsus honshuensis in the variegated carpet shell clam Ruditapes variegatus in Korea, HS Kang, HS Yang, KS Reece, HK Hong, KI Park, and KS Choi

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Fungal denitrification: Bipolaris sorokiniana exclusively denitrifies inorganic nitrogen in the presence and absence of oxygen, R Phillips, G Grelet, A McMillan, B Song, B Weir, and Et al.

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Global analysis of seagrass restoration: the importance of large-scale planting, MM van Katwijk, A Thorhaug, N Marba, RJ Orth, CM Duarte, and Et al.

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Habitat Disturbance Combined With Life History Traits Facilitate Establishment Of Rapana Venosa In The Chesapeake Bay, Juliana M. Harding and Roger Mann

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Hidden in plain sight: Cryptic and endemic malaria parasites in North American white-tailed deer (Odocoileus virginianus), ES Martinsen, N McInerney, H Brightman, K Ferebee, T Walsh, and Et al.

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How well do we know the infaunal biomass of the continental shelf?, EN Powell and R Mann

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Impact of Environment and Ontogeny on Relative Fecundity and Egg Quality of Female Oysters (Crassostrea virginica) from Four Sites in Northern Chesapeake Bay, HL Glandon, AK Michaelis, et al, KS Reece, and et al

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Improving marine disease surveillance through sea temperature monitoring, outlooks and projections, J Maynard, R van Hooidonk, CD Harvell, CM Eakin, G Liu, Jeffrey D. Shields, and Et al.

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Influence of Biological Factors on Connectivity Patterns for Concholepas concholepas (loco) in Chile, Lysel Garavelli, Franois Colas, Philippe Verley, David Michael Kaplan, Beatriz Yannicelli, and Christophe Lett

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Influence of Wind Strength and Duration on Relative Hypoxia Reductions by Opposite Wind Directions in an Estuary with an Asymmetric Channel, Ping Wang, Harry Wang, Lewis Linker, and Kyle Hinson

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Interannual and seasonal variabilities in air-sea CO2 fluxes along the US eastern continental shelf and their sensitivity to increasing air temperatures and variable winds, Bronwyn Cahill, John Wilkin, Katja Fennel, Doug Vandemark, and Marjorie A.M. Friedrichs

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Levels, sources and chemical fate of persistent organic pollutants in the atmosphere and snow along the western Antarctic Peninsula, MA Khairy, JL Luek, R Dickhut, and R Lohmann

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Managing aquatic parasites for reduced drug resistance: lessons from the land, GF McEwan, ML Groner, DL Burnett, MD Fast, and CW Revie

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Managing marine disease emergencies in an era of rapid change, ML Groner, J Maynard, R Breyta, RB Carnegie, A Dobson, and Et al.

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Managing marine mollusc diseases in the context of regional and international commerce: policy issues and emerging concerns, RB Carnegie, I Arzul, and D Bushek

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Marine Phytophthora species can hamper conservation and restoration of vegetated coastal ecosystems, LL Govers, WAM in 't Veid, JP Meffert, TJ Bouma, PCJ van Rijswick, JHT Heusinkveld, RJ Orth, MM van Katwijk, and T van der Heide

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Microbial nitrogen processing in hard clam (Mercenaria mercenaria) aquaculture sediments: the relative importance of denitrification and dissimilatory nitrate reduction to ammonium (DNRA), AE Murphy, IC Anderson, AR Smyth, B Song, and MW Luckenbach

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Millennial-scale sustainability of the Chesapeake Bay Native American oyster fishery, TC Rick, LA Reeder-Myers, CA Hofman, D Breitburg, R Lockwood, G Henkes, L Kellogg, D Lowery, MW Luckenbach, R Mann, MB Ogburn, MJ Southworth, J Wah, J Wesson, and AH Hines

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Moving Forward 21st Century Pathways to Strengthen the Ocean Science Workforce Through Graduate Education and Professional Development, L. C. Schaffner, T. W. Hartley, and J. G. Saunders

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Optimal hurricane overwash thickness for maximizing marsh resilience to sea level rise, David C. Walters and Matthew L. Kirwan

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Out of the Tower and into the Classroom OR How Classroom Partnerships Give Marine Science Grad Students an Edge, Carol Hopper Brill

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Oyster Planting Protocols To Deter Losses To Cownose Ray Predation, Roger L. Mann, Melissa Southworth, Robert A. Fisher, James A. Wesson, A. J. Erskine, and T Leggett

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Parallelism and Epistasis in Skeletal Evolution Identified through Use of Phylogenomic Mapping Strategies, JM Daane, N Rohner, P Konstantinidis, S Djuranovic, and MP Harris

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Patterns of genome size variation in snapping shrimp, NW Jeffery, K Hultgren, STC Chak, TR Gregory, and DR Rubenstein

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Physiological stress and post-release mortality of white marlin (Kajikia albida) caught in the United States recreational fishery, Lela S. Schlenker, Robert J. Latour, Richard W. Brill, and Graves John E.

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Plant characteristics associated with widespread variation in eelgrass wasting disease, ML Groner, CA Burge, CJS Kim, E Rees, and KL Van Alstyne

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Potential drivers of virulence evolution in aquaculture, David A. Kennedy, Gael Kurath, Ilana L. Brito, Maureen K. Purcell, Andrew F. Read, James R. Winton, and Andrew R. Wargo

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Prediction of the Export and Fate of Global Ocean Net Primary Production: The EXPORTS Science Plan, DA Siegel, KO Buesseler, et al, and DK Steinberg

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Progress and Challenges in Coupled Hydrodynamic-Ecological Estuarine Modeling, NK Ganju, MJ Brush, B Rashleigh, AL Aretxabaleta, P del Barrio, JS Grear, LA Harris, SJ Lake, and Et al.

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Quantitative Validation of a Habitat Suitability Index for Oyster Restoration, Seth J. Theuerkauf and Romuald N. Lipcius

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Regression or significance tests: What other choice is there?—An academic perspective, Michael C. Newman and Marcos Krull

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Responses of Antarctic Marine and Freshwater Ecosystems to Changing Ice Conditions, MK Obryk, PT Doran, et al, DK Steinberg, and HW Ducklow

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Salp contributions to vertical carbon flux in the Sargasso Sea, JP Stone and DK Steinberg

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Saltmarsh plant responses to eutrophication, David S. Johnson, RS Warren, LA Deegan, and TJ Mozdzer

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Sea level driven marsh expansion in a coupled model of marsh erosion and migration, ML Kirwan, DC Walters, WG Reay, and JA Carr

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Seamless cross-scale modeling with SCHISM, YLJ Zhang, F Ye, EV Stanev, and S Grashorn

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Short-Term Habitat Use of Juvenile Atlantic Bluefin Tuna, Benjamin J. Marcek, Mary C. Fabrizio, and John E. Graves

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Source-to-sink research: economy of the Earth's surface and its strata, JP Walsh, PL Wiberg, R Aalto, CA Nittrouer, and SA Kuehl

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Spatial and temporal dynamics of Atlantic menhaden (Brevoortia tyrannus) recruitment in the Northwest Atlantic Ocean, A Buchheister, TJ Miller, ED Houde, DH Secor, and RJ Latour

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Temporal dynamics of condition for estuarine fishes in their nursery habitats, R. W. Schloesser and Mary C. Fabrizio

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The demographic consequences of growing older and bigger in oyster populations, JL Moore, RN Lipcius, B Puckettt, and SJ Schrieber

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The Dilemma of Derelict Gear, Andrew M. Scheld, D. M. Bilkovic, and Kirk J. Havens

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The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors, Yanouk Epelboin, Laure Quintric, Eric Guevelou, Pierre Boudry, Vianney Pichereau, and Charlotte Corporeau

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The logic of comparative life history studies for estimating key parameters, with a focus on natural mortality rate, JM Hoenig, AYH Then, EA Babcock, NG Hall, DA Hewitt, and SA Hesp

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Themed Issue Article: Conservation Physiology of Marine Fishes Fisheries conservation on the high seas: linking conservation physiology and fisheries ecology for the management of large pelagic fishes, Andrij Z. Horodysky, Steven J. Cooke, John E. Graves, and Richard W. Brill

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The nature of organic carbon in density-fractionated sediments in the Sacramento-San Joaquin River Delta (California), S. G. Wakeham and E. A. Canuel

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Unstructured-grid model for the North Sea and Baltic Sea: Validation against observations, YLJ Zhang, EV Stanev, and S Grashorn

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Upgrading Marine Ecosystem Restoration Using Ecological-Social Concepts, A Abelson, BS Halpern, DC Reed, RJ Orth, GA Kendrick, and Et al.

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Using Lidar Elevation Data to Develop a Topobathymetric Digital Elevation Model for Sub-Grid Inundation Modeling at Langley Research Center, JD Loftis, HV Wang, RJ DeYoung, and WB Ball

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Variability in Fish Tissue Proximate Composition is Consistent with Indirect Effects of Hypoxia in Chesapeake Bay Tributaries, Troy Tuckey and Mary C. Fabrizio

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virtualspecies, an R package to generate virtual species distributions, B Leroy, CN Meynard, C Bellard, and F Courchamp

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Water residence time in Chesapeake Bay for 1980-2012, JB Du and J Shen

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Why biodiversity is important to the functioning of real-world ecosystems, DA Siegel, KO Buessler, et at, and DK Steinberg